jmchilton

jgalaxy

A Java/Swing front-end to Galaxy (http://galaxyproject.org).

pepnovo

My local changes to PepNovo (http://proteomics.ucsd.edu/Software/PepNovo.html)

proteomics-wine-env

The project lets you package up a Wine environment into a single shell script for distribution to other Linux instances or users.

cloudbiolinux

CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

cloudman_openstack_bootstrap

This project contains a set of scripts and config files I am using to configure CloudMan for MSI's private OpenStack cloud.

psm-eval

Python application and framework for reanalyzing peptide-spectrum-matches (PSMs).

SnpEffect

My local mirror of SVN repository for SnpEffect (http://svn.code.sf.net/p/snpeff/code/SnpEffect/trunk/).

distributed-collectl-parser

A distributed CollectL parsing system for use with msi-software-accounting project.

pymz5

A python library to access mz5 mass spectrometry data files

lorikeet

A Javascript MS/MS spectrum viewer (fork of http://code.google.com/p/lorikeet)

puppet-biocloudcentral

Puppet configuration for biocloudcentral.

puppet-postgresql

A Puppet module for managing postgres

puppetlabs-mysql

getting ready to publish our mysql module!

biocloudcentral

Easily launch CloudMan and CloudBioLinux clusters with no manual configuration

biocloudcentral-puppet

Puppet Config for Deploying biocloudcenral (https://github.com/chapmanb/biocloudcentral)

biopython

Official git repository for Biopython (converted from CVS)

chaussette

clj-blend

Clojure library for interacting with Galaxy, CloudMan, and BioCloudCentral, built on blend4j

europe2013

exon-exon-junction

Updates to the Putative Exon-Exon junction database creation code found here: http://www.zcni.zju.edu.cn/en/download.htm

galaxy-dist

globus-cookbook

Cookbook for installing globus

protbiocloud

Documentation on using CloudBioLinux for Mass Spectrometry and Proteomic Analysis

puppet-lwr

A puppet module managing LWR (https://bitbucket.org/jmchilton/lwr/) servers.

puppet-module-template

Template puppet module to build new modules from.

puppet-python

Puppet module for installing and managing python, pip, virtualenvs and Gunicorn virtual hosts.

puppet-tint

Puppet modules for the TINT project (https://github.com/jmchilton/TINT).

puppet-tomcat

Puppet module for Apache Tomcat

pymz5-failed-attempt

Failed attempt at creating project that builds on h5py code.

pyyayaml

A Python library for parsing YAYAML.