R with different math libs (was: r-with-intel-mkl)
Modified from the original at https://github.com/pachamaltese/r-with-intel-mkl
- Reordered/renamed the output dirs
- Added a shell script to help switching the libraries
- Added a shell script to run the benchmarks
Tested under:
- OS: Ubuntu 20.04.1 LTS x86_64
- Kernel: 5.4.0-52-generic
- Shell: bash 5.0.17
- CPU: AMD Ryzen 3 3200U with Radeon Vega Mobile Gfx (4) @ 2.600GHz
- GPU: AMD ATI 03:00.0 Picasso
- Memory: 13972MiB
Note:
- On the system described above, the Intel MKL (intel-mkl-64bit-2020.4-912) installed from the Intel repository, fails to finish de R benchmark
...
2800x2800 cross-product matrix (b = a' * a)_________ (sec): 2.21566666666667
Error in solve(crossprod(a), crossprod(a, b)) :
the leading minor of order 1620 is not positive definite
Calls: system.time -> solve -> solve
Timing stopped at: 1.818 0.024 0.939
Execution halted
...
Cholesky Factorization
Error in chol.default(B) :
the leading minor of order 215 is not positive definite
Calls: system.time -> chol -> chol.default
Timing stopped at: 0.084 0.072 0.106
Execution halted