José Manuel Camacho's repositories

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bioinfokit

Bioinformatics data analysis and visualization toolkit

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biotech-strains-gems

Genome-scale metabolic models of industrially important strains

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cameo

cameo - computer aided metabolic engineering & optimization

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carveme

CarveMe: genome-scale metabolic model reconstruction

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cobrapy

COBRApy is a package for constraint-based modeling of biological networks

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ECH

Easy Codon Harmonizer (ECH) is a program developed to enhance heterologous protein expression by changing the codon usage.

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OpenPCR

Open Thermocycler Implementation

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kallisto-rnaseq-jupyter

Demo notebooks for Kallisto RNA-Seq analysis

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purl.obolibrary.org

A new system for managing OBO PURLs

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qiime

Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests

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shap

A unified approach to explain the output of any machine learning model.

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SpaceJam

oligo designer for Golden Gate cloning into destination vectors for Cas9 or Cas12-mediated gene activation

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xtraining

Materials for the X-training 2016

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