jmanning2k

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Emulate, Inc.

Boston, MA

Jonathan Manning's starred repositories

SerialTest

Data transceiver(monitor)/realtime plotter/shortcut/file transceiver over serial port/Bluetooth/network on Windows/Linux/Android/macOS | 跨平台串口/蓝牙/网络调试助手，带数据收发/实时绘图/快捷发送/文件收发面板，可在PC和Android设备上使用

Language:C++GPL-3.0117000

exhibitor

ZooKeeper co-process for instance monitoring, backup/recovery, cleanup and visualization.

Language:JavaApache-2.0167700

dockerfile-maven

MATURE: A set of Maven tools for dealing with Dockerfiles

Language:JavaApache-2.0275600

a-2017

Public Repository for cs109a, 2017 edition

Language:Jupyter Notebook32600

igv.js

Embeddable genomic visualization component based on the Integrative Genomics Viewer

Language:HTMLMIT64100

bioinformatics

Tools for bioinformatics moved to http://git.genenetwork.org/pjotrp/bioinformatics

solid2srf

Program to Convert SOLiD Sequencing reads (CSFASTA) to NCBI's SRF format

Language:Shell200

TorrentScout

Torrent Scout is an interactive tool, which provides users access to raw data generated by the Ion Torrent Personal Genome Machine(TM). It allows users to navigate and view data all the way from the raw signal to the final alignment. Torrent Scout is built using the NetBeans architecture, which enables developers to easily add additional components. To download the compiled executable, you can go to: http://torrentscout.iontorrent.com:8080/torrentscout/

Language:JavaNOASSERTION300

TorrentScout

Torrent Scout is an interactive tool, which provides users access to raw data generated by the Ion Torrent Personal Genome Machine(TM). It allows users to navigate and view data all the way from the raw signal to the final alignment. Torrent Scout is built using the NetBeans architecture, which enables developers to easily add additional components.

Language:Java900

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

Language:CNOASSERTION161800

sdk-docs

Ion Torrent SDK Docs

Language:Python1000

sql-explorer

SQL reporting that Just Works. Fast, simple, and confusion-free. Write and share queries in a delightful SQL editor, with AI assistance.

Language:PythonNOASSERTION275600

python-gcon

Python API for interacting with several genomics storage solutions.

Language:Python200

TMAP

Torrent Mapping Alignment Program

Language:CGPL-2.04900

TMAP

Torrent Mapping Alignment Program

Language:CGPL-2.01900

unpaper

A post-processing tool for scanned sheets of paper.

Language:C102500

bootstrap

The most popular HTML, CSS, and JavaScript framework for developing responsive, mobile first projects on the web.

Language:JavaScriptMIT17046800

gatk

Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk repository

Language:Java29400

gridengine

Univa Grid Engine Open Core

Language:C9400

dotfuse

A way to bring composability to otherwise boring dotfiles.

Language:Python700

bedtools-python

A Python interface to the BEDTools API using Cython

Language:C2800

data_hacks

Command line utilities for data analysis

Language:Python193800

vcflib

C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

Language:C++MIT61800

ParKD

Parallel k-D Tree Construction

Language:C++NOASSERTION5500

MAX6675-library

Arduino library for interfacing with MAX6675 thermocouple amplifier

Language:C++NOASSERTION14400

f.lux-indicator-applet

This repository is unmaintained. Visit:

Language:PythonNOASSERTION54900

hmevlc

HME/VLC, A simple streaming HME server for the TiVo Series 3+.

Language:Python1200

iReddit

The iReddit iPhone app

Language:Objective-CNOASSERTION48100

cclindenb

some C/C++ code....

Language:C++NOASSERTION2200

sjcl

Stanford Javascript Crypto Library

Language:JavaScriptNOASSERTION719000