jmandel / PPI-embed

PPI-embed

Unfiled files

Folder: MDS

Contains Matlab and Java files used for classical and metric MDS, courtesy Dan Asarnow.

Folder: random-graphs

Contains functions for generating different types of random graphs

• RandGraphER.m - generate an Erdos-Renyi (Poisson) random graph
• RandGraphERDD.m - generate a configuration model Erdos-Renyi graph whose parameters match the degree distribution given
• RandGraphBA.m - generate a Barbasi-Albert type (scale-free, preferential attachment) random graph
• geoRandGraph.m - generate a geometric random graph
• generateGRGs.m - generate a set of geometric random graphs: function [prefix] = generateGRGs(numNodes,numEdges,[dims],[iters])

Folder: clustering

Folder: graph-util

Folder: euclid-util

Folder: old-scripts

Contains previously used Matlab scripts.

• GraphScratch.m
• graphScratchPad.m
• oldVersionOfGraphStuff.m