Jonathan Lombardino's repositories
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Flye
De novo assembler for single molecule sequencing reads using repeat graphs
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Foster-et-al.
Matlab codes/data for Foster et al. 2020
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MAG_2023_Code
Code Associated With ISS MAG Analysis 2023
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parser_VIBRANT
Code for summarizing VIBRANT outputs for QTL Mapping
Pepperell_RNAseq
Code to perform intergenic RNA-seq analysis
pyGenomeViz
A genome visualization python package for comparative genomics
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Sphingomonas-EggNOG-Workbook
Jupyter Notebook for Parsing and comparing annotations using EmapperV2
Utilities
General purpose tools for every-day sequencing bioinformatics. If you use any of these tools, please acknowledge this repository (there are no publications). Let's all help each other ;)
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