John Lee's repositories
NiftyPETd
NiftyPET for Docker or Singularity images
gen-quickstart-JJL
Docker file for building Gen and Jupyter notebooks for tutorials and case studies
NIMPA
NiftyPET NeuroImage Processing and Analysis
ANTsPyNet
Medical image analysis framework merging ANTsPy and deep learning
ANTsPy
Advanced Normalization Tools in Python
TopologyLayer
A Topology Layer for Machine Learning : Persistent Homology + Features for PyTorch
scratch_jjlee_Singularity
for Singularity workflows
baselines
OpenAI Baselines: high-quality implementations of reinforcement learning algorithms
keras
Deep Learning for humans
pyxnat
XNAT in Python
pylearn2
Warning: This project does not have any current developer. See bellow.
KaczkurkinPark_BifactorStructure
Code for the manuscript "Dimensions of Psychopathology Are Dissociably Linked to Brain Structure in Youth"
Theano
Theano is a Python library that allows you to define, optimize, and evaluate mathematical expressions involving multi-dimensional arrays efficiently. It can use GPUs and perform efficient symbolic differentiation.
nvidia-docker
Build and run Docker containers leveraging NVIDIA GPUs