jizhongzhong's repositories
AAV-screening
Code used in the screening for efficient AAV serotypes
atac-seq-pipeline
ENCODE ATAC-seq pipeline
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
GeneticPlotter
A tool with nice GUI to visualize the codon usage frequencies in whole genomes
getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science
hosts
镜像：https://coding.net/u/scaffrey/p/hosts/git
Joost_et_al_2020_Cell_Stem_Cell
Scripts and Jupyter Notebooks for Joost, Annusver et al. 2020 (Cell Stem Cell)
juicer
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
RNAseq-workflow
A repository for setting up a RNAseq workflow
scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
scRNA.seq.course
Analysis of single cell RNA-seq data course
single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
tabula-muris-senis
Tabula Muris Senis
velocyto.py
RNA velocity estimation in Python