Zhuzhu Wei's repositories
Awesome_Mamba
Welcome to the world of Mamba! This repository is a curated collection of papers, tutorials, videos, and other valuable resources related to Mamba.
adapters
A Unified Library for Parameter-Efficient and Modular Transfer Learning
AI2BMD
AI-powered ab initio biomolecular dynamics simulation
AIRS
Artificial Intelligence for Science (AIRS)
Awesome-Hypergraph-Network
A curated list of Hypergraph Learning, Hypergraph Theory, Hypergraph Dataset and Hypergraph Tool.
awesome-AI4ProteinConformation-MD
List of protein (enzymes and PPIs) conformations and molecular dynamics using generative artificial intelligence and deep learning
awesome-self-supervised-gnn
Papers about pretraining and self-supervised learning on Graph Neural Networks (GNN).
caduceus
Bi-Directional Equivariant Long-Range DNA Sequence Modeling
chemprop
Message Passing Neural Networks for Molecule Property Prediction
chroma
A generative model for programmable protein design
DIG
A library for graph deep learning research
DiM
Diffusion Image Mamba
dyMEAN
This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
equiformer-pytorch
Implementation of the Equiformer, SE3/E3 equivariant attention network that reaches new SOTA, and adopted for use by EquiFold for protein folding
FABind
FABind: Fast and Accurate Protein-Ligand Binding (NIPS 2023)
LDM-3DG
[ICLR 2024] "Latent 3D Graph Diffusion" by Yuning You, Ruida Zhou, Jiwoong Park, Haotian Xu, Chao Tian, Zhangyang Wang, Yang Shen
MolCA
Code for EMNLP2023 paper "MolCA: Molecular Graph-Language Modeling with Cross-Modal Projector and Uni-Modal Adapter".
ProteinWorkshop
Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models and training/task utilities.
pytorch_geometric
Graph Neural Network Library for PyTorch
SGGRL
The implementation of the paper "Multi-Modal Representation Learning for Molecular Property Prediction: Sequence, Graph, Geometry".
Str2Str
Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
torchmd
End-To-End Molecular Dynamics (MD) Engine using PyTorch
TransAntivirus
Transformer-based molecular generative model for antiviral drug design
x-transformers
A simple but complete full-attention transformer with a set of promising experimental features from various papers