jinzhuangdou / SCpubr

Package to generate high quality, publication ready visualizations for single cell transcriptomics data.

SCpubr

This package aims to provide a streamlined way of generating publication ready plots for known Single-Cell visualizations in a "publication ready" format (SCpubr). This is, the aim is to automatically generate plots with the highest quality possible, that can be used right away or with minimal modifications for a research article.

For installation and tutorials consult the reference manual.

Installation

SCpubr can be installed via:

# From CRAN - Official release:
install.packages("SCpubr")

# From GitHub - Latest stable development version:
if(!requireNamespace("devtools", quietly = TRUE)){
  install.packages("devtools") # If not installed.
}

devtools::install_github("enblacar/SCpubr", ref = "v1.1.2-dev-stable")

Updates

SCpubr is an active package currently aiming to improve and add new functionalities.

Keep track of our new updates in the NEWS page!

Citation

To cite SCpubr in your publications, please use:

Blanco-Carmona, E. Generating publication ready visualizations 
for Single Cell transcriptomics using SCpubr. bioRxiv (2022) 
doi:10.1101/2022.02.28.482303.

Contact

[e-mail]