jingydz / TEMP

TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing data

TEMP

TEMP is a software package for detecting transposable elements (TEs) insertions and absences from pooled high-throughput sequencing data

Current version v1.05

Sep 24th 2016 Update: Remove the dependency on samtools view -X option. Now TEMP works for newer versions of samtools (1.x) as well.

Author: Jiali Zhuang ([e-mail]) and Jie Wang ([e-mail]) Weng Lab, University of Massachusetts Medical School, Worcester, MA, USA

For TE insertion analysis run TEMP_Insertion.sh in script. For TE absence analysis run TEMP_Absence.sh in script.