jingraham

persistent-vi

Variational Bayes for discrete undirected models

chroma

A generative model for programmable protein design

GeoMol

openfold

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

gvp

Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure

vedo

A python module for scientific analysis of 3D data based on VTK and Numpy

logue

A collection of Korg logue patches for the NTS-1 (or possibly minilogue XD)

howmanypeoplearearound

Count the number of people around you :family_man_man_boy: by monitoring wifi signals :satellite:

midi2midi

Use Chrome to connect two MIDI devices using <100 lines of Javascript

logue-sdk

This repository contains all the files and tools needed to build custom oscillators and effects for the prologue synthesizer.

eurorack

Eurorack modules

eurorack-prologue

Eurorack Oscillators for Korg prologue, minilogue xd and Nu:tekt NTS-1

dex-lang

Research language for array processing in the Haskell/ML family

DeepLocalProteinDocking

Learning protein representation for rigid-body docking

qvina

Accurately speed up AutoDock Vina

chemprop

Message Passing Neural Networks for Molecule Property Prediction

chemprop

Chemical Property Prediction with Graph Convolutional Networks

PA-Graph-Transformer

Illustrate

Biomolecular Illustration Tool

MLCodeLab

This a working tutorial repository to teach some Machine Learning Basics.

thesis

Differentiable Optimization-Based Modeling for Machine Learning

jax-md

Differentiable, Hardware Accelerated, Molecular Dynamics

protein-sequence-embedding-iclr2019

Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019

Machine-learning-for-proteins

Listing of papers about machine learning for proteins.

Regularized-Linear-Autoencoders

Loss Landscapes of Regularized Linear Autoencoders

UniRep

UniRep model, usage, and examples.

SMILES-enumeration

SMILES enumeration for QSAR modelling using LSTM recurrent neural networks

namedtensor

Named Tensor implementation for Torch

ffjord

code for "FFJORD: Free-form Continuous Dynamics for Scalable Reversible Generative Models".

jax

Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more