Jim Arnold's repositories
fungiForecast
A repo to model success finding mushroom in a given location at a given time of year.
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
mimic-code
MIMIC Code Repository: Code shared by the research community for the MIMIC-III database
notebooks
folder for stats and modeling practice
NLTK_notebooks
Notebooks working through nltk chapters
DataChallenge
For honing DS skills
10000-dice-game-simulator-and-stats
First project on GitHub - 10000 dice game simulator in python
miningSocMed
Exercises in mining social media.
LightGBM
A fast, distributed, high performance gradient boosting (GBDT, GBRT, GBM or MART) framework based on decision tree algorithms, used for ranking, classification and many other machine learning tasks. It is under the umbrella of the DMTK(http://github.com/microsoft/dmtk) project of Microsoft.
annoPipeline
Uses mygene.info and Entrez APIs to annotate gene lists.
sampleproject
Following tutorial on https://packaging.python.org/tutorials/packaging-projects/
biopython
Official git repository for Biopython (converted from CVS)
flavor-data
Data from OpenAg - my analysis of Basil compounds formed under different conditions
mygene.py
mygene is an easy-to-use Python wrapper to access MyGene.Info services.
insightProject
Tool for mining insights from Sunshine Act data
eating-for-two
Insight Project
Economic-Impact-of-Automation-US
I found a great data set linking US job data with the probability of automation in the near future. on data.world and wanted to explore.
Intro-to-Microbiome-Analysis-in-R
Exploring microbiome analysis tools in R
cobrapy
COBRApy is a package for constraint-based modeling of biological networks
cookiecutter
A command-line utility that creates projects from cookiecutters (project templates). E.g. Python package projects, jQuery plugin projects.
googlesheets
Google Spreadsheets R API
sklearn-deap
Use evolutionary algorithms instead of gridsearch in scikit-learn
conda-envs
My conda environment YAML files