jimmybgammyknee

uofaBioWDL

UofA BioWDL genomic workflows

RaScALL

ABACBS_workshop_prep

gammytools

gammytools for Bioinformatics

jimmybgammyknee.github.io

Personal blog and github io page

modules

Module files for Nextflow workflows

201603_BioinfoHub_HPC

ACAD-BioinfoResume-July2022

aDNA_nextflow

BIOTECH-7005-BIOINF-3000

earlyPlacentaRnaSeqProfile

Early to mid gestation RNA-seq analysis for (Breen et al. 2020)

epicsa-july2022

EpiCSA_Methylation_June2016

DNA methylation hands-on tutorial for the Epigenetics Consortium of South Australia's (EpiCSA) Bioinformatics workshop

FeatureCount2GCT

This is a script to convert the output from FeatureCount to GCT format expression tables

granulosa_PR_ChIPseq

Scripts from the analysis of the granulosa PR/H3K27ac ChIPseq for Dinh et al. 2018

introAssemPneu

Assembly of Strep pneum

mapPlots

Plots for ancient genomics

marp-cli-example

The good starter for using Marp via Marp CLI, by the author of Marp

md-cv

markdown cv / résumé built with jekyll

mgi-demultiplex-umi

microarray_analysis_in_R

For BSc (advanced) final year placement students

nf-rnaseq-sagc

RNAseq quantification pipeline

podmur_lizard_analysis

lizard analysis for transcript assembly and quant

sahmri-maxquant-hpc

scripts to run maxquant on sahmri-hpc

tasks

workflows-wdl

standard wdl/cwl workflows - SAHMRI/ABMC