jimmayxu

Beeline

BEELINE: evaluation of algorithms for gene regulatory network inference

SERGIO

A simulator for single-cell expression data guided by gene regulatory networks

INVASE

Codebase for INVASE: Instance-wise Variable Selection - 2019 ICLR

scVI-reproducibility

Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"

PyTorch-Tutorial

Build your neural network easy and fast, 莫烦Python中文教学

pytorch-tutorial

PyTorch Tutorial for Deep Learning Researchers

996.ICU

Repo for counting stars and contributing. Press F to pay respect to glorious developers.

PhD-Thesis

SIMLR_PY

Python Implementation of SIMLR for single-cell visualization and analysis

EMBLmyGFF3

An efficient way to convert gff3 annotation files into EMBL format ready to submit.

microbiome_helper

A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.

vg

tools for working with genome variation graphs

prokka

:zap: :aquarius: Rapid prokaryotic genome annotation

scRNA.seq.course

Analysis of single cell RNA-seq data course

zinbwave

Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave

damtp-unix-intro

Intro materials for mphil students to get started on damtp machines.

jupyter

Jupyter metapackage for installation, docs and chat