Jihe Liu's repositories
docker_hbctraining
Docker images for training at Harvard Bioinformatics Core
AmpliconArchitect
AmpliconArchitect (AA) is a tool to identify one or more connected genomic regions which have simultaneous copy number amplification and elucidates the architecture of the amplicon. In the current version, AA takes as input next generation sequencing reads (paired-end Illumina reads) mapped to the hg19/GrCH37 reference sequence and one or more regions of interest. This is development version. Please "watch" this repository for production release and methods manuscript soon.
Docker-image-for-scRNAseq-workshop
Establish docker image for running scRNAseq workshop
gitkraken_20201209
Walk through of gitkraken workshop
gitkraken_workshop
Hands-on-Workshop
gitkraken_workshop2
module with gitkraken
JAK-MTATFP
A selective JAK inhibitor screening platform
miniasm
Ultrafast de novo assembly for long noisy reads (though having no consensus step)
planets
Version control module demo
practical-python
Practical Python Programming (course by @dabeaz)
RMarkdown_workshop2_online
Try create online repo and then link to local