Jianshu_Zhao's repositories
FastANI_heatmap
This repository contains R code for building a heatmap and histogram with the output of FastANI
FragGeneScanPlusPlus
Scalable high-throughput short-read open reading frame prediction
bin_check
Plot for manual check of binned MAGs from metagenomes
Clair3
Clair3 - Integrating pileup and full-alignment for high-performance long-read variant calling
constellation
Distributed programming for Rust.
dashmap
Blazing fast concurrent HashMap for Rust.
drprg
Drug Resistance Prediction with Reference Graphs
hora
🚀 efficient approximate nearest neighbor search algorithm collections library written in Rust 🦀 .
hyperex
Hypervariable region primer-based extractor for 16S rRNA and other SSU/LSU sequences.
kingfisher-download
Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
MashMap
A fast approximate aligner for long DNA sequences
minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
packed_struct.rs
Bit-level packing and unpacking for Rust
pairwiseAdonis
Pairwise multilevel comparison using adonis
pprodigal
Python3 wrapper for parallelized gene prediction using Prodigal
rasusa
Randomly subsample sequencing reads to a specified coverage
rs-handlegraph
Rust implementation of VG handle graph
SARS-CoV-2_Sequencing
A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.
telomeric-identifier
Identify and find telomeres, or telomeric repeats in a genome.
uniprot.rs
Rust data structures and parser for the Uniprot database(s).
wflambda-rs
Rust implementation of wflambda.
xsv
A fast CSV command line toolkit written in Rust.
xxhash-rust
Rust implementation of xxhash
yaumap
Yet Another UMAP package for R