Materials for the Nationwide Children's 2024 Coder Upgrade, a single-cell analysis coding boot camp run by SCRGOT (the Single Cell Research Group for Omics Technologies).
| Level | Day | Topic |
|---|---|---|
| Beginner | Monday | Intro to R |
| Tuesday | Intro to single-cell and Seurat - through making sobj | |
| Wednesday | Processing Seurat and combining datasets, DE analysis | |
| Thursday | Cell Type annotation, DE analysis | |
| Advanced | Monday | Understanding Seurat object structure |
| Tuesday | ScATAC + regulon analysis | |
| Wednesday | Spatial single-cell analysis | |
| Thursday | 10X multiomics analysis / integrating multiomics datasets |