Darren J. Lin's repositories
ComparStra-Parser
Scripts used to compare SVs detected from long read and long read assembly
SVisionUtils
SVision help functions
aclust
streaming, flexible agglomerative clustering
BamQC
Mapped QC analysis program
bioconda-recipes
Conda recipes for the bioconda channel.
Canopy
Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.
crossstitch
Code for phasing SVs with SNPs
DeepSimulator
The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.
dnaplotlib
DNA plotting library for Python
DWGSIM
Whole Genome Simulator for Next-Generation Sequencing
E-MEM
E-MEM: efficient computation of maximal exact matches for very large genomes
FLAME-Algorithm-FLexible-and-Accurate-Motif-DEtector
Paper: Efficient and Accurate Discovery of Patterns in Sequence Datasets
genomation
R package for genomic feature analysis and visualization
goenrich
GO enrichment with python -- pandas meets networkx
GoogleInterview
some google interview coding questions
gSpan
Python implementation of frequent subgraph mining algorithm gSpan. Directed graphs are supported.
inductive_max_margin
Graph based linear model regularization
JavaGuide
【Java学习+面试指南】 一份涵盖大部分Java程序员所需要掌握的核心知识。
markdown-here
Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.
MSIfromHE
predict microsatellite status from hematoxylin-eosin histology of gastrointestinal cancer
nanopack
Easily install all nanopack scripts together
pacbio_variant_caller
SMRT-SV: Structural variant and indel caller for PacBio reads
pybamer
Capture Coverage and Read Length Statistics BAM files
samplot
Plot structural variant signal form a BAM
Scissor
A flexible complex genome rearrangement simulator
svpluscnv
Integrative analysis of complex structural variants
svtyper
Bayesian genotyper for structural variants
wfmash
base-accurate DNA sequence alignments using WFA and mashmap2