jhuguetn

xnat-pipelines

XNAT pipelines repository

cat12-docker

Docker image of CAT12 (standalone version)

xnat-modules

XNAT modules repo

fsl_oxford_asl-docker

FSL oxford_asl Docker image

WAD_Python

WAD analyse modules in Python

cat12_denoise-docker

CAT12 image denoising as a Docker container

ctp-daemon-service

Linux scripts for CTP Java daemon service manager (branches: sysVinit and systemd/master)

docker-images

Dockerfiles and metadata for XNAT's container service

quality-assessment-protocol

Scripts and documentation for the PCP's protocol for assessing data quality.

dcm2niix

dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

freesurfer

Neuroimaging analysis and visualization suite

markup

The code we use to render README.your_favorite_markup

mriqc

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

nibabel

Python package to access a cacophony of neuro-imaging file formats

nilearn

Machine learning for NeuroImaging in Python

nipype

Workflows and interfaces for neuroimaging packages

nisnap

Display segmentation results over MRI scans in Jupyter notebooks.

pyxnat

XNAT in Python

QSMxT

recon-stats

Parse stats outputs from recon-all

WAD_Interface

NVKF WAD webinterface

WAD_Services

Bundle of WAD_Collector, WAD_Selector and WAD_Processor

xcp_d

post processing of fmriprep , nibabies, hcp and dcan,

XNAT-Dashboards

Dashboards for XNAT

xnat-plugins

XNAT plugins repository

xnat-scripts

XNAT-related client scripts repository

xnat4tests

A Python module that stands up a basic XNAT repository in a single Docker container to be used in testing pipelines interact with the XNAT API and/or container service