jhchung's repositories
22q11DS_WGS_Trio_Analysis
Analysis scripts used for whole genome sequencing analysis of 22q11.2 deletion syndrome
bioconda-recipes
Conda recipes for the bioconda channel.
camera_calibration
Scripts for creating camera color profiles
candidateGeneSetAnalysis
R package to perform candidate gene analysis on high throughput sequencing data.
ensembl-vep
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
focus
FOCUS: Fine-mapping Of CaUsal gene Sets
gcta
GCTA software
knitr-examples
a collection of knitr examples
mdcaptionr
Create caption labels in markdown
MetaXcan
MetaXcan software and manuscript
PHESANT
PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
pheweb
A tool to build a website to browse hundreds or thousands of GWAS.
qqman
An R package for creating Q-Q and manhattan plots from GWAS results
reproducible_research
Tips and tricks in reproducible research
spark-tsne
Distributed t-SNE via Apache Spark
summary-gwas-imputation
harmonization, liftover, and imputation of summary statistics from GWAS
topr
topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple phenotypes can be viewed simultaneously, over the entire genome (Manhattan plot) or in the more detailed regional view.
torus
QTL Discovery using Annotations