jhchung

jhchung

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22q11DS_WGS_Trio_Analysis

Analysis scripts used for whole genome sequencing analysis of 22q11.2 deletion syndrome

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bioconda-recipes

Conda recipes for the bioconda channel.

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camera_calibration

Scripts for creating camera color profiles

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candidateGeneSetAnalysis

R package to perform candidate gene analysis on high throughput sequencing data.

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CGE

Computational Genomics and Epigenomics

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ensembl-vep

The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

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focus

FOCUS: Fine-mapping Of CaUsal gene Sets

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gcta

GCTA software

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geneARTP

Adaptive rank truncated product analysis using gene based p-values.

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knitr-examples

a collection of knitr examples

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mdcaptionr

Create caption labels in markdown

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MetaXcan

MetaXcan software and manuscript

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PHESANT

PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank

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pheweb

A tool to build a website to browse hundreds or thousands of GWAS.

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qqman

An R package for creating Q-Q and manhattan plots from GWAS results

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reproducible_research

Tips and tricks in reproducible research

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spark-tsne

Distributed t-SNE via Apache Spark

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summary-gwas-imputation

harmonization, liftover, and imputation of summary statistics from GWAS

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topr

topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple phenotypes can be viewed simultaneously, over the entire genome (Manhattan plot) or in the more detailed regional view.

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torus

QTL Discovery using Annotations

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