jgoecks

Jeremy Goecks's starred repositories

open-interpreter

A natural language interface for computers

Language:PythonAGPL-3.042175 317 747

xgboost

Scalable, Portable and Distributed Gradient Boosting (GBDT, GBRT or GBM) Library, for Python, R, Java, Scala, C++ and more. Runs on single machine, Hadoop, Spark, Dask, Flink and DataFlow

Language:C++Apache-2.025779 912 5209

altair

Declarative statistical visualization library for Python

Language:PythonBSD-3-Clause8875 140 1931

lab

A customisable 3D platform for agent-based AI research

Language:CNOASSERTION7059 468 226

machine-learning-cheat-sheet

Classical equations and diagrams in machine learning

Language:TeX6584 379 15

cleverhans

An adversarial example library for constructing attacks, building defenses, and benchmarking both

Language:Jupyter NotebookMIT6111 189 453

macos-terminal-themes

Color schemes for default macOS Terminal.app

Language:Swift5867 82 26

EQGRP

Decrypted content of eqgrp-auction-file.tar.xz

Language:Perl4086 397 25

sweetviz

Visualize and compare datasets, target values and associations, with one line of code.

Language:PythonMIT2859 53 133

galaxy

Data intensive science for everyone.

Language:PythonNOASSERTION1342 69 6059

data-centric-ai

Resources for Data Centric AI

Language:TeXApache-2.01083 68 7

datacleaner

A Python tool that automatically cleans data sets and readies them for analysis.

Language:PythonMIT1047 57 13

toil

A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

Language:PythonApache-2.0881 54 2939

bowtie

:bowtie: Create a dashboard with python!

Language:PythonMIT764 26 114

Vegas

The missing MatPlotLib for Scala + Spark

Language:ScalaMIT730 43 104

distribution_diagrams

R-script for generating canonical diagrams of distributions to be used to describe Bayesian hierarchical models.

Language:HTMLMIT402 35 3

scikit-allel

A Python package for exploring and analysing genetic variation data

Language:Jupyter NotebookMIT281 26 260

ga4gh-schemas

Models and APIs for Genomic data. RETIRED 2018-01-24

Language:PythonApache-2.0214 101 356

ClinicalDataSources

Open or Easy Access Clinical Data Sources for Biomedical Research

CC0-1.0167 17 1

gdcp

scp like tool to interact with Google Drive from the command-line

Language:PythonNOASSERTION161 21 30

cognoma

Putting machine learning in the hands of cancer biologists

Language:Jupyter NotebookNOASSERTION96 44 32

TileDB

Language:C++MIT80 33 20

deep_learning_works

Code to accompany "You can probably use deep learning even if your data isn't that big" blog post

Language:PythonMIT73 50

tiny-test-data

Super small biological datasets for unit testing

Language:PythonMIT60 8 3

xenaPython

Python API for Xena Hub

Language:PythonApache-2.050 7 5

g2p-aggregator

Associations of genomic features, drugs and diseases

Language:HTML48 20 92

intropolis

Exon-exon splice junctions across SRA

39 16 5

bioschemas

ga4gh, gdc and bmeg in one place

Language:Protocol BufferMIT300

bcc

LabKey module for Brenden-Colson Center

Language:HTML300

galaxy

Data intensive biology for everyone.

Language:PythonNOASSERTION100