James A. Fellows Yates's repositories
nf-core-tools
Python package with helper tools for the nf-core community.
acad-workshop-2024
Command's from Mikkel's github sessiopn at ACAD aeDNA workshop
AncientMetagenomeDir
Repository containing lists of all published ancient metagenome samples (and related)
askimed-nf-test
Simple test framework for Nextflow pipelines
bioconda-recipes
Conda recipes for the bioconda channel.
configBuilder-nf
Nextflow config builder scripts for supported HPC infrastructures.
dotfiles
Personal dotfiles
genomics-standards-consortium-mixs
Minimum Information about any (X) Sequence” (MIxS) specification
Mastodon-Palaeogenomicists
Most simple DIY webapp to bulk follow palaeogenomicist accounts on Mastodon. Originally by David Adler, Thomas Haase & Hendrik Erz for sociologist accounts.
midnighter-nextflow-gotchas
A collection of unexpected challenges and learnings with nextflow and nf-core.
multi-package-containers
Testing building mulled containers for multi-requirement tools.
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
nextflow-io-nextflow
A DSL for data-driven computational pipelines
nf-core-configs
Config files used to define parameters specific to compute environments at different Institutions
nf-core-eager
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
nf-core-mag
Assembly and binning of metagenomes
nf-core-modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
nf-core-nf-co.re
Code and files for the main nf-core website.
nf-core-test-datasets
Test data to be used for automated testing with the nf-core pipelines
poseidon-framework-website
Main landing page for getting information about the Poseidon project
quarto-quarto-web
Quarto website
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
taxpasta
TAXnomic Profile Aggregation and STAndardisation
taxprofiler-manuscript
Repository of Quarto version of nf-core/taxprofiler manuscript