jfq3's repositories
Auxillary-Xander-scripts
Scripts to aid post-processing of Xander results and adding new gene capability.
co-occurrence
R scripts for performing co-occurrence analyses
Language:RGPL-2.0000
CONSTAX
Evaluation of robustness of common microbiome taxonomic classifiers. Here we present a set of tools and softwares to perform a systematic comparison of commonly used fungal ITS classifiers and databases with the aim to improve taxonomic classification of environmental sequence reads.
Language:PythonMIT000
megagta
HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs
Language:C++000
miga
MiGA: Microbial Genomes Atlas
Language:RubyArtistic-2.0000
MiGA-Web
Documentation for the web-based version of the Microbial Genome Atlas
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pfam-get-hmm
To download HMM models from Pfam
Language:Python000
phonetic-website
This repository is used for Git and GitHub training.
Language:HTML000
RDP---Tutorials
Tutorials for RDP's Command Line Tools
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