jfass

apc

(a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join

compass

Perl / R scripts to COMPare a DNA sequence ASSembly to a trusted reference sequence

PBcR-testing

framework for testing various strategies related to correction of PacBio reads (via Illumina reads) and subsequent use in assembly

scythe

A 3'-end adapter contaminant trimmer

seqHelpers

various Perl, Python, and other scripts to help manipulate high throughput sequence data

2017-June-RNA-Seq-Workshop

2018-May-Microbial-Community-Analysis-Workshop_UCB

2018 May Microbial Community Analysis Workshop @ UCB

Bioinformatics-Genome-Assembly-and-Analysis-Workshop-Pac-Bio-and-10x-Genomics-

Bioinformatics: Genome Assembly and Analysis Workshop [ Pac Bio and 10x Genomics ] - Dec 2016

BWG_References_talk

Talk on reference genomes for summer interns

Cancer_Cell_2022_manuscript_code

Code associated with the Cancer Cell 2022 article "Transcriptomic profiles of neoantigen-reactive T cells in human gastrointestinal cancers" by Chunhong Zheng, et al.

mf2dot

Generate dot files from makefiles.

qmk_firmware

Open-source keyboard firmware for Atmel AVR and Arm USB families

FuBAR

(Fu)sion (B)reakpoint (A)nalysis and (R)eview - test and review gene fusion events with DNA- and RNA-Seq datasets

tkk