Joerg Fallmann's repositories
RNAmediator
RNA secondary structure mediated cooperativity/antagonism
benchmarkingDiffExprAndSpl
Code for workflows for differential splicing and isoform expression comparison paper (Merino et al)
bioconda-recipes
Conda recipes for the bioconda channel.
dropSeqPipe
A SingleCell RNASeq pre-processing pipeline built on snakemake
extract-transcript-regions
For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and CDS).
galaxy-data_source-examples
Examples of Galaxy data_source servers
galaxy-rna-workbench
Galaxy RNA workbench (de.NBI project)
MONSDA_companion
Repository for config files of published results
nf_modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
oh-my-zsh
A delightful community-driven (with 1,100+ contributors) framework for managing your zsh configuration. Includes 200+ optional plugins (rails, git, OSX, hub, capistrano, brew, ant, php, python, etc), over 140 themes to spice up your morning, and an auto-update tool so that makes it easy to keep up with the latest updates from the community.
pb-assembly
PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
pipeline-polya-diff
Pipeline for testing shifts in poly(A) tail lengths estimated by nanopolish
piwik-python-api
Piwik API for Python
ribopop_probe_design
Design rRNA subtraction probes
RNA-Playground
Visualize the inner workings of RNA Bioinformatics algorithms.
rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
segmenTier
segmentation of clustering sequences; applicable to RNAseq time-series
SquiggleKit
SquiggleKit: A toolkit for manipulating nanopore signal data
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
startbootstrap-resume
A Bootstrap 4 resume/CV theme created by Start Bootstrap
StreetScienceCommunity.github.io
Bring science to the "street"
training-material
A collection of training material from offered Galaxy courses
Workflowscripts
Scripts used in Snakemake and other workflows