jessiewu's repositories

bacterialGWAS

A pipeline for performing genome-wide association tests for bacterial genomes.

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substBMA

Modelling across-site variation in the nucleotide substitution process.

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bdsvm

Birth death shift variable model

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bsdpm

Substitution Dirichlet process mixture model with data blocks

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GEMMA

Genome-wide Efficient Mixed Model Association

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MultiTypeTree

BEAST 2 package which provides support for multi-type trees: phylogenetic trees on structured populations.

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Spoon-Knife

This repo is for demonstration purposes only.

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ssrj

Substitution shift with reversible jump MCMC

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The-Structured-Coalescent

The structured coalescent without the need to sample migration histories

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TraitLab

TraitLab is a Matlab toolbox for fitting Stochastic Dollo models

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