Jerome Kelleher's repositories
msprime
Simulate genealogical trees and genomic sequence data using population genetic models
vcztools
Partial reimplementation of bcftools for VCF Zarr
tsinfer-feedstock
A conda-smithy repository for tsinfer.
smc-bit-paper
Paper on backwards in time SMC description
bio2zarr
Convert bioinformatics file formats to Zarr
kastore
The key-array store for read-only numerical data.
vcf-zarr-publication
Manuscript and associated scripts for vcf-zarr publication
what-is-an-arg-paper
Manuscript and code for the "What is an ARG?" paper
lshmm
code to run Li and Stephens
tsinfer-qc
Utilities for evaluating tsinfer inferences
sgkit-publication
Sgkit publication repository
sgkit
Statistical genetics toolkit
wormtable
Write-once-read-many table for large datasets.
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
tskit-site
tskit website
bed-reader-feedstock
A conda-smithy repository for bed-reader.
sgkit-feedstock
A conda-smithy repository for sgkit.
progen-2023
tskit poster for probgen 2023
ga4gh-client-c
Experimental C client library for the GA4GH API.
stdpopsim-feedstock
A conda-smithy repository for stdpopsim.
slim-feedstock
A conda-smithy repository for slim.