jeong2624 / GWAS_pipeline_project

학부연구생_프로젝트 (RISE 수업, 대학교 4학년 2학기)

Project name : Genome-wide association studies (GWAS) pipeline

Project time : 2019.11.03 - 2019.12.11

Description :

• The project was conducted as part of "RISE (Research Intensive Self-motivated Education)" class in the Molecular Life Sciences at Incheon National University, Korea.
• The purpose of this project is to acquire proficiency in GWAS analysis and script writing for the GWAS pipeline using the 'subprocess' module in Python, R program, and Plink.
• It mainly deals with steps below.
  1. Quality control (QC)
  2. Population stratification (the folder name is "Population")
  3. Association test

Furthermore, this project is based on the reference and lecture below.

1. "A tutorial on conducting genome-wide association studies: Quality control and statistical analysis" (2018), Andries T. Marees et al.
2. "Introduction to genetic epidemiology" (lecturer : Han, Mi-Ryung) , 미래BIT융합교육사업단 워크숍 강의 (2019)