jenzopr / container

container

Dockerfiles for important containers

RStudio for single-cell RNA-seq analysis

Building the container

docker build --squash -t scrnaseq.analysis:r6.1_bioc3.9 https://gitlab.gwdg.de/jens.preussner/container.git#:scRNAseq.analysis

Running the container

docker run -d -p 172.16.12.92:8787:8787 -e USERID=$UID -v /path/to/workspace:/home/rstudio/path/to/workspace scrnaseq.analysis:r6.1_bioc3.9

Jupyter for scanpy and stream analysis

docker run -d -p 172.16.12.92:8888:8888 -v /workspace:/home/jovyan/work -e NB_UID=xxxx -e NB_GID=xxxx --user root scanpy.analysis:py3.7.3