jelman

FSL_FIX

FMRIB's ICA-based Xnoiseifier

connectivity

tools for connectivity analysis

LC_Marking

PupAlz

Code for the PupAlz study

pupil_AX-CPT

pupillometry

Scripts to process pupillometry data

AMICO_container

Signularity container for AMICO NODDI

baracus

cognitive_domains

CognitiveDomains_PracEffecAdj

Create VETSA cognitive domains from practice effect corrected data

DST

Hold various processing and analysis scripts for the DST project

fslnets

python wrap of fslnets

GIFT_analysis

Set of scripts to operate on GIFT output

lakcluster_c

MetaXcan

MetaXcan software and manuscript

misc

misc functions and scripts

pathwayPRS_paper

Code used in the manuscript investigating associations between pathway-specific PRS and ATN biomarkers

pe_manuscript

Practice effects manuscript

PE_MCI_VETSA3

Code to generate practice effect corrected data for VETSA 3 MCI diagnosis

pna-notebooks

Notebooks for the Berkeley course on practical neuroimaging

pna-utils

Utilities for practical neuroimaging analysis class

practice_effects_VETSA

pupil_RT

roi_connectivity

Basic functional connectivity on ROI timecourses

rsfmri_pib

Misc scripts from study examining relationship between PIB and rs-fmri

SKM_cluster

scripts to run sparse k-means clustering with resampling in order to create PIB+ and PIB- groups

TwinModels

vetsa2bids

Scripts to convert VETSA MRI data to BIDS format

vetsa_pupillometry

Pupillometry scripts for VETSA project

voxelwise_pib

Set of scripts to incorporate voxelwise pib data into FSL processing stream