Jean Elbers's repositories
alphafold
Open source code for AlphaFold.
APA-Scan
Detection and visualization of annotated and potential Alternative Polyadenylation events
genomes
genome assembly and annotation scripts
herro
HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1, Kit 14, Ultra-long (UL) reads.
jovian
Detecting variants in NGS short read data by sequence-to-sequence modeling
juicer
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
julia-bio
some JuliaLang bioinformatics scripts in the form of gists
meson-python
Meson PEP 517 Python build backend
mudskipper
A tool for projecting genomic alignments to transcriptomic coordinates
MultiPL-E
A multi-programming language benchmark for evaluating the performance of large language model of code.
podman
Podman: A tool for managing OCI containers and pods.
rust-bk-tree
A BK-tree implementation in Rust.
stRainy
Graph-based assembly phasing
ULPwgs
Utility tool that integrates commonly used bioinformatic tools for ULP-WGS analysis
vcfdist
vcfdist: Accurately benchmarking phased variant calls
vechat
Correcting errors in noisy long reads using variation graphs
VNtyper
A tool to genotype MUC1 coding VNTR in ADTKD
XAM.jl
Parse and process SAM and BAM formatted files