This repository contains instructions for building a Docker container with some tools for processing Next Generation Sequencing data.
To download the image, execute the following command in the terminal:
docker pull "jeffreyhanson/ngs-tools:latest"
| Name | Version | Description |
|---|---|---|
| fastp | 2.2.5 | An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting...) |
| FastQC | 0.11.8 | A quality control tool for high throughput sequence data. |
| Velvet | 1.2.10 | Sequence assembler for very short reads |
| VelvetOptimizer | 2.2.5 | VelvetOptimiser is a multi-threaded Perl script for automatically optimising the three primary parameter options (K, -exp_cov, -cov_cutoff) for the Velvet de novo sequence assembler |