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Jeff Kimbrel (jeffkimbrel)

jeffkimbrel

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Jeff Kimbrel's starred repositories

kmer_search

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mappgene

mappgene (Massively Parallel and Portable Genomic Sequence Analysis) runs SARS-CoV-2 sequencing on HPC platforms.

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mds-hypothesis-testing

Multidimensional scaling method for F-informed hypothesis testing

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S7

S7: a new OO system for R

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awesome-quarto

A curated list of Quarto talks, tools, examples & articles! Contributions welcome!

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py-pkgs

Open source book about making Python packages.

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awesome-rust

A curated list of Rust code and resources.

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PHANOTATE

PHANOTATE: a tool to annotate phage genomes.

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multiPhATE2

multiPhATE with comparative genomics

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phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

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factoextra

Extract and Visualize the Results of Multivariate Data Analyses

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gggenes

➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2

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dada2

Accurate sample inference from amplicon data with single nucleotide resolution

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