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Computes overlap of SNPs with regulatory elements and exports to CSV or the UCSC Genome Browser
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Uses shiny to launch a web-based user interface. This interface allows either a CSV download or the creation of a UCSC Genome Browser session via the rtracklayer package.
library(devtools)
options(repos=c("http://cran.rstudio.com","http://www.bioconductor.org/packages/release/bioc"))
install_github("snpscope", username="bluecranium")
library(snpscope)
runWebApp()
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Adding custom tracks from BED files and CSV Download of overlaps do not work from within the package yet
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Need to implement a file chooser so the path to the BED files can be set from the interface