jeff-k

bio-seq

Bit packed and well-typed biological sequences

cbgb

Coloured de Bruijn Graph Builder

bio-streams

Streaming iterators for bioinformatics data

colour-poa

coloured partial order alignment

amygda

Automated Mycobacterial Growth Detection Algorithm, funded by NIHR Oxford Biomedical Research Centre

merge-mates

Trim and merge mated forward-reverse read pairs

amplicontig

Extract Illumina read pairs that exactly match primer sequences

bio-seq-derive

Procedural macros used by bio-seq

genetracks

Diagrams for genomic sequences

viridian_workflow

pyrustbio

Python bindings for rust

bioinformatics-toolkit

A collection of bioinformatics algorithms

clockwork

CRyPTIC data processing pipelines

covid-sequence-analysis-workflow

covid-workflow-manager

epitran

A tool for transcribing orthographic text as IPA (International Phonetic Alphabet)

fastlin

Mycobacterium tuberculosis complex lineage typing

jeff-k.github.io

kmers

A bit-packed k-mer representation (and relevant utilities) for rust

lines-are-rusty

Rust File API for the reMarkable tablet

noodles

Bioinformatics I/O libraries in Rust

rs-gfa

GFA parser in Rust

rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

rust-bio-types

A library of common biomedical types.

rust-debruijn

De Bruijn graphs in Rust

SARS-CoV2_workflows

simkitty

AI gym for simulating quadruped robots

ybc

A Yew component library based on the Bulma CSS framework.

ybc-example

yew

Rust / Wasm framework for building client web apps