Josh Wheaton's repositories
CalliNGS-NF
GATK RNA-Seq Variant Calling in Nextflow
Language:NextflowMPL-2.0000
rnaseq_pipeline
A Snakemake pipeline for RNA-seq analysis
Language:Python000
atacseq_pipeline
My Snakemake pipeline for ATAC-seq processing.
Language:PythonMIT000
juicer
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Language:ShellMIT000
my-cv
:page_facing_up: Awesome CV is LaTeX template for your outstanding job application
000
facs-classifier
Sandbox for FACS cell type classification using ML methods
Language:Jupyter Notebook000
HiC-spector
Spectral and reproducibility analysis of Hi-C contact maps
Language:Julia000
singularity-ngs
Singularity containers for common NGS analysis tools
chipseq_pipeline
A snakemake pipeline for processing ChIP-seq data
Language:Python000
FlowJoStatPlot
A python package (and eventual web app) to quickly plot summary statistics output from the FlowJo table editor
Language:Jupyter NotebookMIT000