jdreyf

crossedpower

R code for the Shiny app that accompanies Westfall, Kenny, & Judd (2014)

SeSAMeStr

Automated Pipeline to run SeSAMe Analysis on MM285 Methylation Array

addinexamplesWV

Ad-ins and keyboard shortcuts for building calculation pipelines in R

pheno-utils

Pheno data utils - viz, loaders, mergers

ReferenceEnhancer

sesame

🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips

IlluminaHumanMethylationEPICanno.ilm10b5.hg38

Illumina Human Methylation EPIC annotation to use with IlluminaHumanMethylationEPICB5manifest and minfi

r-value

Supplementary Material for "Quantifying replicability and consistency in systematic reviews" [submitted]

ggpicrust2

Make Picrust2 Output Analysis and Visualization Easier

maaslin2_benchmark

Large-scale Benchmarking of Microbial Multivariable Association Methods

Summer2024-Internships

Collection of Summer 2024 tech internships!

metarep

meta-analysis with replicability-analysis

rGV

:exclamation: This is a read-only mirror of the CRAN R package repository. rGV — Analysis of Continuous Glucose Monitor Data

openproblems-v2

Formalizing and benchmarking open problems in single-cell genomics

Seq2MAG

Metagenomics workflow from sequencing data to Metagenome-Assembled Genomes (MAGs)

SBGNview

training-collection

Collection of bioinformatics training materials

diet_microbiota_host_git_model

Disentangling diet-microbiota-host contributions to the host metabolic phenotype

DACT

Testing for mediation effects in genome-wide epigenetic studies

repfdr

Replicability Analysis for Multiple Studies of High Dimension. Development continues at :

radjust

radjust: Replicability Adjusted p-values for Two Independent Studies with Multiple Endpoints

adaFilter

screenMin

R code to accompany Djordjilovic et al. (2019)

GSimp

GSimp is a Gibbs sampler-based missing value imputation approach

cgmanalysis

:exclamation: This is a read-only mirror of the CRAN R package repository. cgmanalysis — Clean and Analyze Continuous Glucose Monitor Data

iglu

R package for Interpreting GLUcose data from CGMs (Continuous Glucose Monitors)

rwrap

Seamlessly integrate R packages into Python.

Inferring-and-Visualizing-RNA-Velocity-in-Bulk-RNA-SEQ

Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.

NAguideR

NAguideR: performing and prioritizing missing value imputations for consistent bottom-up proteomic analyses

translational_regulation

Detection of differential translated genes using Ribo-seq