James Kent's repositories
2020-bp_comfy_pants
getting started to build scikit learn models
mergeAtlas
merging atlases
2018_hackathon_scikit_open
Lesion mapping hackathon
awesome-rseng
A curated list of GitHub organizations that primarily serve open source or academic software projects.
bctpy
brain connectivity toolbox for python
brainiak
Brain Imaging Analysis Kit
dmriprep
dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
fmridenoise
Tool for automatic denoising, denoising strategies comparison, and functional connectivity data quality control.
fmriprep
fMRIprep is a functional magnetic resonance image pre-processing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.
heudiconv
A flexible DICOM converter for organizing brain imaging data into structured directory layouts
lc-python-intro
Library Carpentry: Python Intro for Libraries
mne-bids
MNE-BIDS
modelExample
example of stop signal task
neurodesign
Source code for pypi package neurodesign
neurodocker
Generate custom Docker and Singularity images, and minimize existing containers
nistats
Modeling and statistical inference on fMRI data in Python
niworkflows
Common workflows for MRI (anatomical, functional, diffusion, etc)
nyancat
NyanCat in 3D built with Three.js
PlasmaPy
A community developed python package for plasma physics in the early stages of development.
regressionResources
lectures/classes/resources I've used in my quest to understand regression
sdcflows
Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes
vscode-binder
VS Code on Binder
WIN
website for WIN