jdblischak / tiledb-vcf-feedstock

About tiledb-vcf-feedstock

Feedstock license: BSD-3-Clause

Home: http://tiledb.com

Package license: MIT

Summary: Efficient variant-call data storage and retrieval library using the TileDB storage library.

Development: https://github.com/TileDB-Inc/TileDB-VCF

Documentation: https://docs.tiledb.com/developer/tiledbvcf/introduction

TileDB-VCF is the python interface to the TileDB-VCF library.

Current build status

Azure

Variant Status linux_64 osx_64 osx_arm64 win_64

Current release info

Name	Downloads	Version	Platforms

Installing tiledb-vcf

Installing tiledb-vcf from the tiledb channel can be achieved by adding tiledb to your channels with:

conda config --add channels tiledb
conda config --set channel_priority strict

Once the tiledb channel has been enabled, libtiledbvcf, tiledbvcf-py can be installed with conda:

conda install libtiledbvcf tiledbvcf-py

or with mamba:

mamba install libtiledbvcf tiledbvcf-py

It is possible to list all of the versions of libtiledbvcf available on your platform with conda:

conda search libtiledbvcf --channel tiledb

or with mamba:

mamba search libtiledbvcf --channel tiledb

Alternatively, mamba repoquery may provide more information:

# Search all versions available on your platform:
mamba repoquery search libtiledbvcf --channel tiledb

# List packages depending on `libtiledbvcf`:
mamba repoquery whoneeds libtiledbvcf --channel tiledb

# List dependencies of `libtiledbvcf`:
mamba repoquery depends libtiledbvcf --channel tiledb

Updating tiledb-vcf-feedstock

If you would like to improve the tiledb-vcf recipe or build a new package version, please fork this repository and submit a PR. Upon submission, your changes will be run on the appropriate platforms to give the reviewer an opportunity to confirm that the changes result in a successful build. Once merged, the recipe will be re-built and uploaded automatically to the tiledb channel, whereupon the built conda packages will be available for everybody to install and use from the tiledb channel. Note that all branches in the TileDB-Inc/tiledb-vcf-feedstock are immediately built and any created packages are uploaded, so PRs should be based on branches in forks and branches in the main repository should only be used to build distinct package versions.

In order to produce a uniquely identifiable distribution:

• If the version of a package is not being increased, please add or increase the build/number.
• If the version of a package is being increased, please remember to return the build/number back to 0.

Feedstock Maintainers

• @ihnorton
• @jdblischak
• @shelnutt2