Jacob Cooper's repositories
autoprimer
For automatically designing primers.
blastcheck
Uses NCBI Blast to see if a sequence returns a unique hit
checkprimer
A small program for making check primers.
conference_nlp
Trying out some Natural Language Processing using conference abstracts from Dros 2019.
corsair
Do PAML in bulk.
Corsair_aws
A separate version from the Corsair repo, meant for running with AWS.
fly_counter
For counting the Drosophilas, but probably just melanogaster
python-rust-how-to
The most basics of basics of using rust to make python go fast
tri_hybid_mapping
Programs and scripts for genomic sequence data processing and analysis
dash_tutorial
Simple dashboard with some geographic data on bees
garrycoin
The first Garret based cryptocurrency.
gene_ontology_category
A python program to extract genes from an ontology given a general category.
kinase_assay_builder
For building a multiplexed kinase treatment assay
learning_anova
To learn how to stats.
litecoin
Litecoin source tree
ml_tutorials
For machine learning practice
my_nvim_config
For holding nvim config
MyNeuralNet
A small repository for practicing writing neural networks
pdf-chatbot
Writing up a chatbot that can RAG from multiple pdfs
plate_maker
For prepping plates for experiments.
python_flow
Quick flow cytometry demo using FSCparser
recursion_python_course
The python class for Recursion Pharmaceuticals.
stable_diffusion
Some code practice for stable diffusion and react
test_api
Writing out a test API based on jamescalam's Medium tutorial
timeline_graph
For making timelines of people at your job.