Jean-Christophe Houde's repositories
AMICO
Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data
bids-specification
Brain Imaging Data Structure (BIDS) Specification
cave-fibers
A project to bring Fiber tractography visualization and interaction to the University of Sherbrooke's CAVE
cbrain-plugins-diffusion
Plugin set for diffusion MRI processing on CBRAIN.
dipy
Diffusion MR Imaging in Python
dipy_web
Website generation and content management tools for dipy.org
django-publications-bootstrap
A Django app for managing scientific publications.
django-simple-blog
django-simple-blog is a simple Django app for fast integrating your current project with a blog-system. You can easily write blog posts, let users comment the posts
dmriqcpy
Diffusion MRI Quality Check in python
FiberCompression
A tool for tractography streamlines compression
fibernavigator
The original Fibernavigator: tool for vizualization of DTI and MRI data
ismrm_2015_tractography_challenge_scoring
Scripts used to recreate the results of the ISMRM 2015 Tractography Challenge
MAGeTbrain
Multiple Automatically Generated Templates brain segmentation algorithm
qMRLab
Quantitative Magnetic Resonance Imaging Made Easy with qMRLab: a Software for Data Simulation, Analysis and Visualization
roboto
Repository to contain the Ansible files that can be used to configure machines in the lab and in the general Neuroimaging community.
scilpy
The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
singularity-tractoflow
Files needed to build a Singularity container to run the TractoFlow pipeline
tract_querier
Implementation of the White Matter Query Language and associated tools for dMRI white matter tract extraction and analysis
tractconverter
Converter for different neuro-imaging file formats.
tractoflow
TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity