jcbyts

ephys-matlab

Matlab tools for electrophysiology experiments

pds-stimuli

collection of stimuli for pldaps neurophysiology tools

pdstools

matlab code for analyzing spike data collected with pldaps

MarmoV5

MarmoView stimulus code

mtlipglm

V1FreeViewingCode

Code to analyze V1 data from Mitchell lab

BinaryPursuit

spike sorting with overlapping waveforms

gabordots

Random Dot Kinematogram inspired stimulus

GLMtutorial

simple spiking GLM with spike history and coupling filters

MarmoPipe

Preprocessing code for MarmoV5 datafiles

neureye

Neural network based eye calibration using spikes

PLDAPS

Plexon Datapixx Psychtoolbox - Neurophysiology experiment toolbox for MATLAB

website

datasets

Python library to access datasets in my publications

datajoint-matlab

High-level relational database interface for MATLAB

DeepLabCut

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals

edfmex

flownet2-pytorch

Pytorch implementation of FlowNet 2.0: Evolution of Optical Flow Estimation with Deep Networks

gaborMotionPulses

fitting cell and behavior STRFs to gabor motion pulses, using ASD

imaginAIry

AI imagined images. Pythonic generation of stable diffusion images.

JRCLUST

JRCLUST

KiloSort

GPU code for spike sorting

motionEnergyDemo

A demo of the motion energy model that runs on mp4s

mouse-eye-tracking

some scripts for tracking mouse eyes from video

MTRFs_ASD

fitting MT RFs using ASD

neuroGLM

Fitting and analysis of trial-based neural spike responses with Generalized Linear Model (GLM).

nex-utils

ridgeModel

SCdivNorm

Can SC has divisive normalization?

sortingQuality

Functions to assess quality of spike sorting results