jboktor's repositories
ablm
Protein language model customized for antibodies
Auto-GPT
An experimental open-source attempt to make GPT-4 fully autonomous.
auto-gpt-web
Set Your Goals, AI Achieves Them.
autogen
Enable Next-Gen Large Language Model Applications. Join our Discord: https://discord.gg/pAbnFJrkgZ
BEBI205_1
Assignment 1 BE/BI 205
BI-BE-CS-183-2023
Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
Caltech-CS155-2023
Assignments for Machine Learning & Data Assimilation, Winter 2023
BEBI205_AIRR
Final project for Caltech BE/BI 205 Deep Learning for Biological Sciences
Bi-270A-2023
Caltech Bi270a Metagenomic Analysis Tutorials
biocircuits
Utilities for Caltech course BE 150
CD-MRG-metabolomics_summerschool_2023
This repository contains teaching material for the 3rd International Summer School on Non-Targeted Metabolomics Data Mining for Biomedical Research
codone
Codon optimization tool
colab-pdf
Simple script to download your colab ipynb as a pdf using nbconvert
covid-moonshot
Scripts and input files associated with docking and free energy calculations for the COVID Moonshot
evodock
A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
habitat-lab
A modular high-level library to train embodied AI agents across a variety of tasks and environments.
mag
Assembly and binning of metagenomes
masif_seed
Masif seed paper repository
MetaGPT
🌟 The Multi-Agent Framework: Given one line Requirement, return PRD, Design, Tasks, Repo
ninjaMap
Compute strain abundance in a defined microbial community
repliclust
Generate synthetic data with clusters.
TRILL
Sandbox for Deep-Learning based Computational Protein Design
UMIc
A framework implementing a method for UMI deduplication and reads correction.