jbloomlab

SARS-CoV-2-RBD_DMS

Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike

dms_tools2

software for the analysis and visualization of deep mutational scanning data

SARS-CoV-2-RBD_DMS_variants

map_flu_serum_Perth2009_H3_HA

mutational antigenic profiling of Perth/2009 H3 HA against serum

SARS2-mut-spectrum

Mutational spectrum of SARS-CoV-2

SARS-CoV-2-RBD_B.1.351

Mapping mutations to the SARS-CoV-2 B.1.351 RBD that reduce binding of polyclonal plasmas from B.1.351-convalescent individuals

SARS-CoV-2-RBD_MAP_LY-CoV555

Mutational antigenic profiling of LY-CoV555 antibody alone and in cocktail with LY-CoV016 using yeast-displayed SARS-CoV-2 RBD

polyclonal-paper

Additional data and code for generating figures in polyclonal paper

2B06_DMS

Deep mutational scanning of Patrick Wilson 2B06 antibody

Ace2_expression_neuts

binarymap

Binary representations of protein/nucleotide sequences.

CoV_evolutionary_space

Evans_structures_public

flu_mortality

Influenza excess mortality over time

flu_PB1flank-GFP_neut_assay

PB1flank-eGFP neutralization assay details

FluA-20_D2_MAP_in_vivo

MERS-PDF2180-RBD_DMS

Deep mutational scanning of the MERS and PDF-2180 CoV receptor-binding domains

RBD_escape_calculator_paper

paper on the RBD escape calculator

SARS-CoV-2-BA.1_Spike_DMS_validations

SARS-CoV-2-Delta_Spike_DMS_validations

SARS-CoV-2-RBD_Beta_mosaic_np_vaccine

SARS-CoV-2-RBD_Delta

SARS-CoV-2-RBD_MAP_Karolinska

SARS-CoV-2-RBD_MAP_minibinders

SARS-CoV-2-RBD_MAP_OAS

SARS-CoV-2-RBD_MAP_Vir_mAbs

SARS-CoV-2-RBD_Omicron_MAP_LY-CoV1404

Mutational antigenic profiling of the yeast-displayed Omicron BA.1 RBD for LY-CoV1404 mAb binding

SARS-CoV-2_Bjorkman_pilot

SARS-CoV-2_bottleneck

Characterizing the inter-host transmission of minor variants in a large cluster of transmission.

SARS2-prot-sub-counts

Counts of protein substitutions on SARS-CoV-2 global UShER tree