jbkinney

17_qbbootcamp

Exercises for the 2017 WSBS QB Bootcamp

16_qbbootcamp

Material for the 2016 WSBS QB Bootcamp

17_urp

Code for 2017 CSHL URP program

16_qbcourse

Code for the Quantitative Biology course at CSHL, Fall 2016

15_sordella

09_sortseq

Data and inferred models from Kinney et. al., 2010, PNAS

argweaver

Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)

14_sheu

Processed data and analysis code for Sheu et al., 2015.

14_crispr

Code and processed data reported in Shi et al. (2015) Nat. Biotechnol. [in press]

14_maxent

Code for "Unification of Field Theory and Maximum Entropy Methods for Learning Probability Densities" (2014) by Justin B. Kinney, available at http://arxiv.org/abs/1411.5371

07_ema_likelihood

Code for computational work reported in Kinney et al. (2007) PNAS 104(2):501-506.