jbkinney

logomaker

Software for the visualization of sequence-function relationships

mavenn

MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect

suftware

SUFTware: Statistics Using Field Theory

18_urp

Excercises for the 2018 URP programming workshop

16_titeseq

Processed data and analysis code for Adams et al., 2016 bioRxiv

13_deft

Code for "Rapid and Rapid and deterministic estimation of probability densities using scale-free field theories" arXiv:1312.6661 [physics.data-an]

15_splicing

22e_qbbootcamp

Materials for the 2022 QB Bootcamp at Cold Spring Harbor Laboratory

19_mlcb

Code for Tareen & Kinney (MLCB 2019) https://doi.org/10.1101/835942

23e_qbbootcamp

2023 Quantitative Biology Bootcamp at Cold Spring Harbor Laboratory

24e_urp

Code for the 2024 CSHL URP Python Programming Course

21_nickels

Computational Scripts for Transcriptional Pausing

22_drugs

22_drugs

22e_urp

2021 URP Python course at CSHL

23e_urp

Code for the 2023 CSHL URP Python Programming Course

17_ars

Analysis code for Hu et al., 2020

17_inducibility

Supplemental Code for Forcier et al., 2018

18_expressionmanifolds

Data and analysis scripts for Forcier et al., 2018 (preprint)

18_qbbootcamp

Code for the 2018 QB Bootcamp in the Watson School for Biological Sciences

18_qbcourse

19_qbbootcamp

GitHub repository for the 2019 QB Bootcamp

19_urp

Materials for the 2019 URP Programming and Data Analysis Course at Cold Spring Harbor Laboratory

19_urp_staging

Exercises for the 2019 URP Python Programming and Data Analysis Course

20_nickels

20_qbbootcamp

Repository for the 2020 QB Bootcamp, CSHL School of Biological Sciences

21_qbbootcamp

Repository for the 2021 QB Bootcamp at CSHL

23_posfai

gitignore

A collection of useful .gitignore templates

MaveReferences

Table of Multiplexed Assay of Variant Effect (MAVE) studies

old_21_qbbootcamp