jbarnoud

cgbuilder

Build coarse-grained mapping for molecules from a web-GUI

simoji

Run a GROMACS simulation with emojis!

doiclient

Python wrapper arround DOI® content negociation API

PinchGlove

Minimal VR glove for the Oculus Quest

gromit

Auxiliary tools for automated atomistic and coarse-grained molecular dynamics simulations using gromacs

simulation_yellow_pages

Inventory of places that host or inventory molecular simulations.

volfit

aframe-boilerplate

[DISCONTINUED] Hello, WebVR starter kit for A-Frame.

Benchmarks_Distance

Benchmarks for distance searches

cgheliparm

Scripts used to analyze dsDNA structures from Martini MD simulations.

ChemDyME

Automated reaction mechanism generator and general boxed molecular dynamics package for accelerated sampling in molecular dynamics simulations.

chemfiles.rs

Rust bindings to chemfiles

docs

dotlazyvim

gdext

Rust bindings for Godot 4

godot-docs

Godot Engine official documentation

gsoc

Numfocus Google Summer of Code Materials

guinea_fowl_crest_area

Insane

INSert membrANE - A simple, versatile tool for building coarse-grained simulation systems

Martini_PolyPly

Tool for generating MARTINI Polymer itps and structures

Martinize

Martini Molecular Dynamics Tools

mdanalysis

MDAnalysis is a Python library to analyze molecular dynamics trajectories.

networkx

Official NetworkX source code repository.

omm-top

Quick test on a OpenMM parser for gromacs input files

panedr-feedstock

A conda-smithy repository for panedr.

PBxplore

Explore protein structures with Protein Blocks

pytest

The pytest framework makes it easy to write small tests, yet scales to support complex functional testing

sumndx

Display a short summary of a gromacs index file

TMCS-2019

TMCS 2019 software training course

westpa_tutorials

Tutorials and additional documentation for the WESTPA suite