Jackie Williams's repositories
Biomarker_Identification
Biomarker Identification for Bravo, Williams, Gkoutos and Acharjee
academic-kickstart
📝 Easily create a beautiful website using Academic, Hugo, and Netlify
allenminer
flexible tool to search allen brain atlases
Ataxia-Annotation-Disparity
Repository for code to run the ataxia annotation disparity analysis, Williams et al 2018 (in preparation)
behavior-ontology
Neuro Behaviour Ontology: an ontology for human and animal behaviour processes and behaviour phenotypes
ChronotypeCardiometabolic
Genes special issue paper repo
cibookex-r
Causal Inference: What If. R and Stata code for Exercises
diffusion-kernel
Using a diffusion kernel to analyze large networks.
GenomicInteractions
R/Bioconductor package for handling Genomic interaction data, annotating genomic features with interaction information and producing summary plots / statistics
Hi-C
MSc Bioinformatics, Independent Research Project Source Code
HiC-inspector
HiC-inspector, a bioinformatics pipeline to facilitate the analysis of HiC dataset.
labs
Scripts for HarvardX courses: PH525x
phd_thesis_markdown
Template for writing a PhD thesis in Markdown
PhdThesis
Appendices for a PhD thesis submitted to the University of Birmingham
PhenoGraph
Subpopulation detection in high-dimensional single-cell data
rethinking-tensorflow-probability
Statistical Rethinking (2nd Ed) with Tensorflow Probability
theArtic
example MR data scraping for a cold place
WeightTracker
R script to track and forecast weight and BMI
williams_2020_ML_SCN
Supplementary material for Williams et al 2020: Machine learning predicts abnormal circadian rhythm phenotypes in mouse
Williams_APR_YR2_Supplement
Supplemental Material for Annual Progress Review, 2018