jasper1918

PrimerBot

High-throughput qPCR primer design

AGE

a tools that implements an algorithm for optimal alignment of sequences with structural variants (SVs)

bioconda-recipes

Conda recipes for the bioconda channel.

CNV_Radar-1

CNV Rapid Aberration Detection And Reporting

CRISPResso

Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data

Current-Protocols-in-Bioinformatics-2017

cwltool

Common Workflow Language reference implementation

docker-ci-tool-stack

Docker Infrastructure via docker-compose (Jenkins, SonarQube, Nexus, GitLab, Selenium Grid)

dx-cwl

Import and run CWL workflows on DNAnexus (alpha)

ea-utils

Automatically exported from code.google.com/p/ea-utils

GeneAnalytics

GeneAnalytics

intervaltree-bio

Interval tree convenience classes for genomic data

Katana

Command-line tool to soft-clip reads based on primer locations.

linux_stuff

ml-discussions

Jupyter notebooks for the ML course at UCI

pandasVCF

VCF parser using the Python pandas library

pyfaidx

Efficient pythonic random access to fasta subsequences

python-machine-learning-book-2nd-edition

The "Python Machine Learning (2nd edition)" book code repository and info resource

rnaseqSim

SMC-RNA-Challenge

ssw

Python interface for SIMD Smith-Waterman Library

STAR-SEQR

RNA Fusion Detection Using STAR. (aka starseqr)

StructuralVariantAnnotation

R package designed to simplify structural variant analysis

svtools

Tools for processing and analyzing structural variants.

TCGAsurvival

Scripts to analyze TCGA data